PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0339.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 808aa    MW: 89347.9 Da    PI: 7.5276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0339.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.7e-18317416198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +gr+W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kaladp0076s0339.2.p 317 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGREWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 405
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kaladp0076s0339.2.p 406 -PEGKLVMGFRK 416
                          .77777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-29310418IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20314416IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-22315416No hitNo description
PfamPF023621.2E-15317416IPR003340B3 DNA binding domain
SMARTSM010198.9E-21317418IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293317418IPR003340B3 DNA binding domain
PROSITE profilePS5105013.35539589IPR011124Zinc finger, CW-type
PfamPF074962.6E-11544586IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MAARTCFNRS CTEVKSTRSS NGWRLSTGEY SILCDRCASL YEDGRFCEVF HSQAPGWVPC  60
QSCNKHIHCG CIVSSHTFML LDAGGIECIT CAKRSGRPIQ PGNLSYPPPP PLPHGVHRSP  120
FSERIRDLST KSWSQFSGVG PMQWREAPNL YNSFLAQSEA NTRVPCDIGI SNALIKNKSN  180
EDFSLSFLEK KIQRETDWSM RRIDRNSGAP MEMSSSKEDL STLRLEHVLI NSSANESNSG  240
IAASGSLLRA APSSETPNSL HSIYSSEVDP SCKTPTQNGR SHADGKSKNQ LLIRYLPRTT  300
DEELQKIAGS SEIKPLFEKT LSASDAGRIG RLVVPKKCAE AYFPHISQPE GLPLKVQDVK  360
GREWVFQFRF WPNNNSRMYV LEGVTSYIQS MQLLAGDKVT FSRLEPEGKL VMGFRKASKG  420
STDLGEHPNK ISNNGDSNAG INLNLSNADK SGYIAKDVTN VKSSVSRKRK NSSIFSKDRH  480
LLLESMDLYE LKITLEEAQR LIRPSPNHLS RVVIVENEIE EYEDCPVIGK PTVFTTDQMG  540
KSIQWAQCED CLKWRRLSAD VLLPAKWTCS ENYSDLERSS CSSPQDISAE HLADLLFSKN  600
QSASKKIKVT HQEVDTIEAV EGLDALANLA ILGEGQAVTT KHPRHRIGCS CIVCIQPPSG  660
KGRKHKHTCD CTVCLTVKRR FQTLMLRREK KQQEKDAEAA SEKLQRCSSL LEKSLENDPL  720
TYDNSSASTP TLKEVTGDGS VDISCGNKSS ASPLKDQIDL NIKPERDDPV LSYNAAEAVD  780
QMNSSIHGAV VEVADNPTQT VEVVEPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1531642413122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467887.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G41e-169Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLV4U9070.0V4U907_9R
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-133HSI2-like 1